CAEBREN_31527 protein (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAEBREN_31527

Uncharacterized protein. (350 aa)

Predicted Functional Partners:

CAEBREN_06798

0.865

CAEBREN_23607

0.752

CAEBREN_04710

0.705

CAEBREN_31377

0.646

CAEBREN_17534

0.646

CAEBREN_15429

0.612

CAEBREN_31154

0.589

CAEBREN_24548

0.582

CAEBREN_07677

0.580

CAEBREN_07450

0.580

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_04710	CAEBREN_06798	G0PM94	G0NQD0	AlbA_2 domain-containing protein.	Uncharacterized protein.	0.799
CAEBREN_04710	CAEBREN_15429	G0PM94	G0NPU6	AlbA_2 domain-containing protein.	Uncharacterized protein.	0.574
CAEBREN_04710	CAEBREN_17534	G0PM94	G0P180	AlbA_2 domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.746
CAEBREN_04710	CAEBREN_23607	G0PM94	G0NYX9	AlbA_2 domain-containing protein.	Uncharacterized protein.	0.921
CAEBREN_04710	CAEBREN_24548	G0PM94	G0MEP1	AlbA_2 domain-containing protein.	Uncharacterized protein.	0.915
CAEBREN_04710	CAEBREN_31154	G0PM94	G0MTZ0	AlbA_2 domain-containing protein.	Uncharacterized protein.	0.639
CAEBREN_04710	CAEBREN_31377	G0PM94	G0P178	AlbA_2 domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.746
CAEBREN_04710	CAEBREN_31527	G0PM94	G0NVT7	AlbA_2 domain-containing protein.	Uncharacterized protein.	0.705
CAEBREN_06798	CAEBREN_04710	G0NQD0	G0PM94	Uncharacterized protein.	AlbA_2 domain-containing protein.	0.799
CAEBREN_06798	CAEBREN_07450	G0NQD0	G0NUT9	Uncharacterized protein.	Uncharacterized protein.	0.776
CAEBREN_06798	CAEBREN_07677	G0NQD0	G0NUT8	Uncharacterized protein.	Uncharacterized protein.	0.776
CAEBREN_06798	CAEBREN_15429	G0NQD0	G0NPU6	Uncharacterized protein.	Uncharacterized protein.	0.577
CAEBREN_06798	CAEBREN_17534	G0NQD0	G0P180	Uncharacterized protein.	ULP_PROTEASE domain-containing protein.	0.611
CAEBREN_06798	CAEBREN_23607	G0NQD0	G0NYX9	Uncharacterized protein.	Uncharacterized protein.	0.770
CAEBREN_06798	CAEBREN_24548	G0NQD0	G0MEP1	Uncharacterized protein.	Uncharacterized protein.	0.832
CAEBREN_06798	CAEBREN_31154	G0NQD0	G0MTZ0	Uncharacterized protein.	Uncharacterized protein.	0.763
CAEBREN_06798	CAEBREN_31377	G0NQD0	G0P178	Uncharacterized protein.	ULP_PROTEASE domain-containing protein.	0.611
CAEBREN_06798	CAEBREN_31527	G0NQD0	G0NVT7	Uncharacterized protein.	Uncharacterized protein.	0.865
CAEBREN_07450	CAEBREN_06798	G0NUT9	G0NQD0	Uncharacterized protein.	Uncharacterized protein.	0.776
CAEBREN_07450	CAEBREN_23607	G0NUT9	G0NYX9	Uncharacterized protein.	Uncharacterized protein.	0.501

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About