STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cbn-skr-16CBN-SKR-16 protein; Belongs to the SKP1 family. (181 aa)    
Predicted Functional Partners:
Cbn-lin-23
CBN-LIN-23 protein.
    
 0.978
CAEBREN_12924
Uncharacterized protein.
    
 0.978
Cbn-cul-1
CBN-CUL-1 protein; Belongs to the cullin family.
   
 0.937
CAEBREN_06748
RING-type domain-containing protein.
   
 0.934
Cbn-cul-6
CBN-CUL-6 protein; Belongs to the cullin family.
   
 0.901
CAEBREN_20304
JmjC domain-containing protein.
   
 0.887
CAEBREN_23270
JmjC domain-containing protein.
   
 0.887
CAEBREN_21837
Uncharacterized protein.
   
 0.887
Cbn-skpt-1
CBN-SKPT-1 protein.
    
 0.846
CAEBREN_07766
F-box domain-containing protein.
   
 0.845
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.