Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CAEBREN_00497 | CAEBREN_01380 | G0NVV9 | G0N8B5 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA ligase. | 0.713 |
CAEBREN_00497 | CAEBREN_08695 | G0NVV9 | G0P9W5 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.987 |
CAEBREN_00497 | CAEBREN_14732 | G0NVV9 | G0MER9 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | AAA domain-containing protein. | 0.640 |
CAEBREN_00497 | CAEBREN_18241 | G0NVV9 | G0MCA3 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | AAA domain-containing protein. | 0.550 |
CAEBREN_00497 | CAEBREN_25255 | G0NVV9 | G0N8B1 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA ligase. | 0.713 |
CAEBREN_00497 | CAEBREN_29612 | G0NVV9 | G0NJK0 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA_MISMATCH_REPAIR_2 domain-containing protein. | 0.997 |
CAEBREN_00497 | CAEBREN_31496 | G0NVV9 | G0P2F9 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. | 0.610 |
CAEBREN_00497 | Cbn-polh-1 | G0NVV9 | G0NBR7 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | CBN-POLH-1 protein. | 0.689 |
CAEBREN_00497 | crn-1 | G0NVV9 | G0PD85 | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.951 |
CAEBREN_01380 | CAEBREN_00497 | G0N8B5 | G0NVV9 | DNA ligase. | DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). | 0.713 |
CAEBREN_01380 | CAEBREN_08130 | G0N8B5 | G0NU65 | DNA ligase. | Uncharacterized protein. | 0.840 |
CAEBREN_01380 | CAEBREN_08695 | G0N8B5 | G0P9W5 | DNA ligase. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.988 |
CAEBREN_01380 | CAEBREN_14732 | G0N8B5 | G0MER9 | DNA ligase. | AAA domain-containing protein. | 0.966 |
CAEBREN_01380 | CAEBREN_18241 | G0N8B5 | G0MCA3 | DNA ligase. | AAA domain-containing protein. | 0.865 |
CAEBREN_01380 | CAEBREN_29612 | G0N8B5 | G0NJK0 | DNA ligase. | DNA_MISMATCH_REPAIR_2 domain-containing protein. | 0.601 |
CAEBREN_01380 | CAEBREN_31496 | G0N8B5 | G0P2F9 | DNA ligase. | DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. | 0.705 |
CAEBREN_01380 | Cbn-polh-1 | G0N8B5 | G0NBR7 | DNA ligase. | CBN-POLH-1 protein. | 0.728 |
CAEBREN_01380 | crn-1 | G0N8B5 | G0PD85 | DNA ligase. | Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] | 0.994 |
CAEBREN_08130 | CAEBREN_01380 | G0NU65 | G0N8B5 | Uncharacterized protein. | DNA ligase. | 0.840 |
CAEBREN_08130 | CAEBREN_08695 | G0NU65 | G0P9W5 | Uncharacterized protein. | Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. | 0.989 |
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