CAEBREN_14235 protein (Caenorhabditis brenneri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CAEBREN_14235

RING-CH-type domain-containing protein. (324 aa)

Predicted Functional Partners:

CAEBREN_01886

0.983

Cbn-erd-2

0.906

CAEBREN_11819

0.747

CAEBREN_10472

0.697

CAEBREN_11672

0.655

Cbn-cdc-48.1

0.655

CAEBREN_08050

0.655

Cbn-cdc-48.2

0.655

CAEBREN_08045

0.652

CAEBREN_32635

0.652

Your Current Organism:

Caenorhabditis brenneri

NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAEBREN_01886	CAEBREN_14235	G0MPC2	G0PCP1	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.983
CAEBREN_01886	Cbn-erd-2	G0MPC2	G0MHU8	Uncharacterized protein.	ER lumen protein-retaining receptor.	0.906
CAEBREN_08045	CAEBREN_10472	G0MNA1	G0NFU2	NOT2_3_5 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.868
CAEBREN_08045	CAEBREN_14235	G0MNA1	G0PCP1	NOT2_3_5 domain-containing protein.	RING-CH-type domain-containing protein.	0.652
CAEBREN_08050	CAEBREN_11819	G0PAK6	G0MML0	Uncharacterized protein.	F-box domain-containing protein.	0.704
CAEBREN_08050	CAEBREN_14235	G0PAK6	G0PCP1	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.655
CAEBREN_08050	Cbn-cdc-48.1	G0PAK6	G0MVN9	Uncharacterized protein.	CBN-CDC-48.1 protein; Belongs to the AAA ATPase family.	0.929
CAEBREN_08050	Cbn-cdc-48.2	G0PAK6	G0PJC1	Uncharacterized protein.	CBN-CDC-48.2 protein; Belongs to the AAA ATPase family.	0.930
CAEBREN_08050	Cbn-erd-2	G0PAK6	G0MHU8	Uncharacterized protein.	ER lumen protein-retaining receptor.	0.611
CAEBREN_10472	CAEBREN_08045	G0NFU2	G0MNA1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	NOT2_3_5 domain-containing protein.	0.868
CAEBREN_10472	CAEBREN_14235	G0NFU2	G0PCP1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RING-CH-type domain-containing protein.	0.697
CAEBREN_10472	CAEBREN_32635	G0NFU2	G0NTV2	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	NOT2_3_5 domain-containing protein.	0.868
CAEBREN_11672	CAEBREN_11819	G0MFQ1	G0MML0	Uncharacterized protein.	F-box domain-containing protein.	0.704
CAEBREN_11672	CAEBREN_14235	G0MFQ1	G0PCP1	Uncharacterized protein.	RING-CH-type domain-containing protein.	0.655
CAEBREN_11672	Cbn-cdc-48.1	G0MFQ1	G0MVN9	Uncharacterized protein.	CBN-CDC-48.1 protein; Belongs to the AAA ATPase family.	0.929
CAEBREN_11672	Cbn-cdc-48.2	G0MFQ1	G0PJC1	Uncharacterized protein.	CBN-CDC-48.2 protein; Belongs to the AAA ATPase family.	0.930
CAEBREN_11672	Cbn-erd-2	G0MFQ1	G0MHU8	Uncharacterized protein.	ER lumen protein-retaining receptor.	0.611
CAEBREN_11819	CAEBREN_08050	G0MML0	G0PAK6	F-box domain-containing protein.	Uncharacterized protein.	0.704
CAEBREN_11819	CAEBREN_11672	G0MML0	G0MFQ1	F-box domain-containing protein.	Uncharacterized protein.	0.704
CAEBREN_11819	CAEBREN_14235	G0MML0	G0PCP1	F-box domain-containing protein.	RING-CH-type domain-containing protein.	0.747

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About