STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAEBREN_31045Uncharacterized protein. (402 aa)    
Predicted Functional Partners:
CAEBREN_20081
Uncharacterized protein.
    
 
 0.799
CAEBREN_00555
Uncharacterized protein.
   
   0.754
CAEBREN_08435
Uncharacterized protein.
    
 
 0.753
CAEBREN_29065
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
    
   0.732
Cbn-rpl-25.2
CBN-RPL-25.2 protein; Belongs to the universal ribosomal protein uL23 family.
    
   0.732
rps-16
Ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
    
   0.721
Cbn-rpl-4
CBN-RPL-4 protein.
    
   0.721
CAEBREN_10053
Uncharacterized protein.
    
   0.721
CAEBREN_32864
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
   
   0.718
CAEBREN_21237
Ribosomal_L2_C domain-containing protein.
   
 
 0.718
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.