STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cbn-ubl-5CBN-UBL-5 protein. (73 aa)    
Predicted Functional Partners:
CAEBREN_00923
Uncharacterized protein.
    
 0.995
CAEBREN_30499
Uncharacterized protein.
    
 0.989
CAEBREN_09848
Uncharacterized protein.
    
 0.989
CAEBREN_31265
MPN domain-containing protein.
    
 
 0.983
CAEBREN_21197
Uncharacterized protein.
    
 0.977
CAEBREN_19392
Uncharacterized protein.
    
 0.977
CAEBREN_10093
Uncharacterized protein.
    
 0.972
CAEBREN_24976
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.971
CAEBREN_01931
WD_REPEATS_REGION domain-containing protein.
    
 0.971
CAEBREN_15812
Uncharacterized protein.
   
 0.962
Your Current Organism:
Caenorhabditis brenneri
NCBI taxonomy Id: 135651
Other names: C. brenneri, Caenorhabditis CB5161, Caenorhabditis brenneri Sudhaus & Kiontke, 2007, Caenorhabditis n. sp. CB5161, Caenorhabditis sp. 1 CB5161, Caenorhabditis sp. 4 (CB5161, LKC28, SB129, SB280), Caenorhabditis sp. 4 (CE-II), Caenorhabditis sp. CB5161, Caenorhabditis sp. PB2801
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