STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BEH_03085Stress response protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0229 family. (392 aa)    
Predicted Functional Partners:
BEH_03080
Protein prkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
BEH_03245
Stage V sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.975
BEH_03055
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.580
BEH_17890
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.546
BEH_00380
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
BEH_03090
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.487
BEH_03095
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.487
gvpA
Gas vesicle protein GvpA; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
       0.452
BEH_05310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
BEH_07305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.418
Your Current Organism:
Bacillus endophyticus
NCBI taxonomy Id: 135735
Other names: Bacillus endophyticus Reva et al. 2002, CIP 106778, DSM 13796, JCM 12211, UCM B-5715, strain 2DT
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.