STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BEH_08910Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)    
Predicted Functional Partners:
BEH_10450
Rhamnogalacturonan acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.771
kduI-2
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.744
BEH_14040
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.713
BEH_08940
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.675
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.671
BEH_08915
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.619
BEH_17345
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.590
BEH_08985
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
     0.533
BEH_05620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.526
BEH_10445
Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.526
Your Current Organism:
Bacillus endophyticus
NCBI taxonomy Id: 135735
Other names: Bacillus endophyticus Reva et al. 2002, CIP 106778, DSM 13796, JCM 12211, UCM B-5715, strain 2DT
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