STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI-25-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (276 aa)    
Predicted Functional Partners:
BEH_08935
2-deoxy-D-gluconate 3-dehydrogenase; Involved in the metabolism of 2-deoxyglucose; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.960
BEH_05715
2-deoxy-D-gluconate 3-dehydrogenase; Involved in the metabolism of 2-deoxyglucose; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.862
BEH_05710
Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.795
BEH_12275
Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family.
   
    0.764
BEH_08910
Glycosyl hydrolase family 88; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.744
BEH_08940
AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.672
BEH_08925
2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.659
BEH_08920
Ketohydroxyglutarate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.634
BEH_10445
Carbohydrate esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.541
BEH_19840
PhoU family transcriptional regulator; Plays a role in the regulation of phosphate uptake.
   
    0.536
Your Current Organism:
Bacillus endophyticus
NCBI taxonomy Id: 135735
Other names: Bacillus endophyticus Reva et al. 2002, CIP 106778, DSM 13796, JCM 12211, UCM B-5715, strain 2DT
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