BSLG_00307 protein (Batrachochytrium salamandrivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

BSLG_00307

Uncharacterized protein. (316 aa)

Predicted Functional Partners:

BSLG_05443

0.579

BSLG_04768

0.579

BSLG_03143

0.579

BSLG_04367

0.475

BSLG_03748

0.441

Your Current Organism:

Batrachochytrium salamandrivorans

NCBI taxonomy Id: 1357716
Other names: AMFP13/1, B. salamandrivorans, Batrachochytrium salamandrivorans Martel, Blooi, Bossuyt & Pasmans 2013, CBS 135744, Chytridiales sp. AM-2013, Chytridiomycota sp. AM-2013

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BSLG_00307	BSLG_03143	A0A1S8W983	A0A1S8VYY1	Uncharacterized protein.	Uncharacterized protein.	0.579
BSLG_00307	BSLG_03748	A0A1S8W983	A0A1S8VW87	Uncharacterized protein.	Uncharacterized protein.	0.441
BSLG_00307	BSLG_04367	A0A1S8W983	A0A1S8VUL2	Uncharacterized protein.	Uncharacterized protein.	0.475
BSLG_00307	BSLG_04768	A0A1S8W983	A0A1S8VSV8	Uncharacterized protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.579
BSLG_00307	BSLG_05443	A0A1S8W983	A0A1S8VPX6	Uncharacterized protein.	Uncharacterized protein.	0.579
BSLG_03143	BSLG_00307	A0A1S8VYY1	A0A1S8W983	Uncharacterized protein.	Uncharacterized protein.	0.579
BSLG_03143	BSLG_04768	A0A1S8VYY1	A0A1S8VSV8	Uncharacterized protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.965
BSLG_03748	BSLG_00307	A0A1S8VW87	A0A1S8W983	Uncharacterized protein.	Uncharacterized protein.	0.441
BSLG_03748	BSLG_04367	A0A1S8VW87	A0A1S8VUL2	Uncharacterized protein.	Uncharacterized protein.	0.557
BSLG_04367	BSLG_00307	A0A1S8VUL2	A0A1S8W983	Uncharacterized protein.	Uncharacterized protein.	0.475
BSLG_04367	BSLG_03748	A0A1S8VUL2	A0A1S8VW87	Uncharacterized protein.	Uncharacterized protein.	0.557
BSLG_04768	BSLG_00307	A0A1S8VSV8	A0A1S8W983	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	Uncharacterized protein.	0.579
BSLG_04768	BSLG_03143	A0A1S8VSV8	A0A1S8VYY1	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	Uncharacterized protein.	0.965
BSLG_04768	BSLG_05443	A0A1S8VSV8	A0A1S8VPX6	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	Uncharacterized protein.	0.948
BSLG_05443	BSLG_00307	A0A1S8VPX6	A0A1S8W983	Uncharacterized protein.	Uncharacterized protein.	0.579
BSLG_05443	BSLG_04768	A0A1S8VPX6	A0A1S8VSV8	Uncharacterized protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.948

Network Stats

number of nodes:

11

number of edges:

27

average node degree:

4.91

avg. local clustering coefficient:

0.943

expected number of edges:

12

PPI enrichment p-value:

0.000143

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 108

1.51

3.17

5.08e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019843

rRNA binding

11 of 44

1.9

5.69

3.25e-18

GO:0003735

Structural constituent of ribosome

11 of 57

1.79

4.94

2.08e-17

GO:0000049

tRNA binding

3 of 28

1.54

0.96

0.0086

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 61

1.76

4.81

1.34e-17

GO:0044391

Ribosomal subunit

5 of 18

1.95

3.17

6.42e-08

GO:0015934

Large ribosomal subunit

4 of 9

2.15

3.06

5.22e-07

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:129

rRNA-binding

9 of 11

2.42

7.84

9.15e-18

CL:126

Ribosome

10 of 23

2.14

6.86

4.97e-18

CL:123

Ribosome

11 of 40

1.94

5.98

1.46e-18

CL:131

Mixed, incl. Large ribosomal subunit, and K Homology domain, type 2

6 of 6

2.51

5.6

6.70e-12

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

apak03010

Ribosome

11 of 56

1.8

5.07

5.14e-18

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0044391

Ribosomal subunit

8 of 25

2.01

4.93

4.88e-13

GOCC:0005840

Ribosome

9 of 46

1.8

4.2

3.79e-13

GOCC:0015934

Large ribosomal subunit

5 of 10

2.2

3.84

9.67e-09

GOCC:0022626

Cytosolic ribosome

4 of 20

1.81

2.16

1.51e-05

GOCC:0015935

Small ribosomal subunit

3 of 15

1.81

1.62

0.00038

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0699

rRNA-binding

11 of 41

1.93

6.01

5.11e-19

KW-0689

Ribosomal protein

11 of 58

1.78

4.96

7.72e-18

KW-0820

tRNA-binding

3 of 18

1.73

1.37

0.0013

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