STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIL51454.1DNA damage-inducible protein DinB; Overlaps another CDS; Pfam: DinB superfamily. (172 aa)    
Predicted Functional Partners:
KIL51453.1
Hypothetical protein; Overlaps another CDS.
       0.773
KIL51678.1
Pfam: Protein of unknown function (DUF664).
  
     0.712
KIL47293.1
Pfam: Bacterial ABC transporter protein EcsB.
  
     0.678
KIL52559.1
Hypothetical protein.
  
     0.654
KIL52592.1
Hypothetical protein; Overlaps another CDS.
  
     0.650
KIL51455.1
Hypothetical protein.
       0.623
KIL42727.1
Hypothetical protein; Pfam: FhuF 2Fe-2S C-terminal domain; Pfam: Ferric iron reductase FhuF-like transporter.
  
     0.589
KIL42736.1
Hypothetical protein; Pfam: Peptidase family M50.
  
     0.584
KIL51241.1
Hypothetical protein.
  
     0.562
KIL44680.1
Hypothetical protein; Overlaps another CDS; Pfam: SWIM zinc finger.
  
     0.557
Your Current Organism:
Jeotgalibacillus alimentarius
NCBI taxonomy Id: 135826
Other names: Bacillus kangii, J. alimentarius, JCM 10872, Jeotgalibacillus alimentarius Yoon et al. 2001, KCCM 80002, strain YKJ-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.