STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIL50249.1Hypothetical protein. (37 aa)    
Predicted Functional Partners:
KIL50250.1
Signal peptide protein; Pfam: EAL domain; SMART: Putative diguanylate phosphodiesterase.
       0.551
prfC
Hypothetical protein; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.484
Your Current Organism:
Jeotgalibacillus alimentarius
NCBI taxonomy Id: 135826
Other names: Bacillus kangii, J. alimentarius, JCM 10872, Jeotgalibacillus alimentarius Yoon et al. 2001, KCCM 80002, strain YKJ-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.