STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIL43985.1Hypothetical protein; Pfam: Nucleotidyltransferase substrate binding protein like. (45 aa)    
Predicted Functional Partners:
KIL43984.1
Nucleotidyltransferase domain-containing protein; Pfam: Nucleotidyltransferase domain.
       0.773
KIL43986.1
Pfam: Protein of unknown function (DUF436); TIGRFAM: TIGR01440: TIGR01440 family protein; Belongs to the UPF0340 family.
       0.570
KIL43987.1
TIGRFAM: rpiB: ribose 5-phosphate isomerase B; TIGRFAM: rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family; Pfam: Ribose/Galactose Isomerase.
       0.521
KIL43988.1
Hypothetical protein; Pfam: Low molecular weight phosphotyrosine protein phosphatase; SMART: Low molecular weight phosphatase family.
       0.521
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
       0.503
Your Current Organism:
Jeotgalibacillus alimentarius
NCBI taxonomy Id: 135826
Other names: Bacillus kangii, J. alimentarius, JCM 10872, Jeotgalibacillus alimentarius Yoon et al. 2001, KCCM 80002, strain YKJ-13
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