Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KIL43496.1Pfam: GtrA-like protein. (138 aa)    
Predicted Functional Partners:
KIL43497.1
Pfam: Glycosyl transferases group 1; Pfam: Glycosyltransferase Family 4.
 
     0.873
KIL43498.1
Pfam: NAD dependent epimerase/dehydratase family.
 
     0.818
KIL50707.1
Hypothetical protein.
  
     0.697
KIL46616.1
Hypothetical protein; Overlaps another CDS; Pfam: Oligosaccharide biosynthesis protein Alg14 like.
 
     0.632
KIL46615.1
Hypothetical protein; Overlaps another CDS; Pfam: Glycosyltransferase family 28 C-terminal domain.
  
     0.629
KIL51376.1
DNA polymerase III subunit beta; Overlaps another CDS; Pfam: Nucleotidyltransferase domain.
  
     0.557
KIL46974.1
Recombinational DNA repair protein RecT (prophage associated); Overlaps another CDS; Pfam: RecT family.
  
     0.512
KIL50745.1
Pfam: Bacterial protein of unknown function (DUF939).
  
     0.483
KIL43574.1
Hypothetical protein; Pfam: Divergent AAA domain.
 
     0.479
KIL46628.1
Glycosyltransferase; Pfam: Glycosyl transferase family 2.
  
 
 0.473
Your Current Organism:
Jeotgalibacillus alimentarius
NCBI taxonomy Id: 135826
Other names: Bacillus kangii, J. alimentarius, JCM 10872, Jeotgalibacillus alimentarius Yoon et al. 2001, KCCM 80002, strain YKJ-13
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