STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
L798_03354Enhancer of rudimentary homolog; May have a role in the cell cycle. (103 aa)    
Predicted Functional Partners:
L798_05970
Uncharacterized protein.
   
    0.827
L798_11761
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
  
 0.807
L798_14145
Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
   0.728
L798_10765
Small nuclear ribonucleoprotein Sm D2.
   
   0.699
L798_09491
Small nuclear ribonucleoprotein G.
   
    0.699
L798_01332
THO complex subunit 4-B.
   
 
 0.679
L798_07698
Small nuclear ribonucleoprotein Sm D3.
   
   0.661
L798_07339
FoP_duplication domain-containing protein.
   
 
 0.636
L798_02841
RNA-binding protein 1.
   
    0.535
L798_01845
La protein-like protein.
   
  
 0.523
Your Current Organism:
Zootermopsis nevadensis
NCBI taxonomy Id: 136037
Other names: Z. nevadensis
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