STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCA5SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5. (1050 aa)    
Predicted Functional Partners:
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 0.961
CECR2
CECR2 histone acetyl-lysine reader.
   
 0.927
BAZ1B
Bromodomain adjacent to zinc finger domain 1B.
   
 0.923
RSF1
Remodeling and spacing factor 1.
   
 0.920
BPTF
Bromodomain PHD finger transcription factor.
   
 0.917
POLE3
CBFD_NFYB_HMF domain-containing protein.
    
 0.848
BAZ2B
Bromodomain adjacent to zinc finger domain 2B.
    
 0.825
SMARCC1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1.
   
 
 0.820
RBBP7
RB binding protein 7, chromatin remodeling factor.
   
 0.819
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.819
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.