FAM98B protein (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FAM98B

Family with sequence similarity 98 member B. (443 aa)

Predicted Functional Partners:

RTCB

0.998

DDX1

0.993

FAM98A

0.992

C7H2orf49

0.988

F6QAS0_MONDO

0.988

ENSMODP00000046671

0.988

RTRAF

0.987

ZBTB8OS

0.950

F6UIF8_MONDO

0.950

ENSMODP00000052592

0.950

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C7H2orf49	DDX1	ENSMODP00000003041	ENSMODP00000012882	Uncharacterized protein.	DEAD-box helicase 1.	0.914
C7H2orf49	ENSMODP00000046671	ENSMODP00000003041	ENSMODP00000046671	Uncharacterized protein.	Uncharacterized protein.	0.900
C7H2orf49	ENSMODP00000052592	ENSMODP00000003041	ENSMODP00000052592	Uncharacterized protein.	Archease domain-containing protein.	0.934
C7H2orf49	F6QAS0_MONDO	ENSMODP00000003041	ENSMODP00000008656	Uncharacterized protein.	Uncharacterized protein.	0.902
C7H2orf49	F6UIF8_MONDO	ENSMODP00000003041	ENSMODP00000026373	Uncharacterized protein.	Archease domain-containing protein.	0.934
C7H2orf49	FAM98A	ENSMODP00000003041	ENSMODP00000059661	Uncharacterized protein.	Family with sequence similarity 98 member A.	0.942
C7H2orf49	FAM98B	ENSMODP00000003041	ENSMODP00000001384	Uncharacterized protein.	Family with sequence similarity 98 member B.	0.988
C7H2orf49	RTCB	ENSMODP00000003041	ENSMODP00000001716	Uncharacterized protein.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.988
C7H2orf49	RTRAF	ENSMODP00000003041	ENSMODP00000051667	Uncharacterized protein.	RNA transcription, translation and transport factor.	0.931
C7H2orf49	ZBTB8OS	ENSMODP00000003041	ENSMODP00000021742	Uncharacterized protein.	Archease domain-containing protein.	0.934
DDX1	C7H2orf49	ENSMODP00000012882	ENSMODP00000003041	DEAD-box helicase 1.	Uncharacterized protein.	0.914
DDX1	ENSMODP00000046671	ENSMODP00000012882	ENSMODP00000046671	DEAD-box helicase 1.	Uncharacterized protein.	0.914
DDX1	ENSMODP00000052592	ENSMODP00000012882	ENSMODP00000052592	DEAD-box helicase 1.	Archease domain-containing protein.	0.707
DDX1	F6QAS0_MONDO	ENSMODP00000012882	ENSMODP00000008656	DEAD-box helicase 1.	Uncharacterized protein.	0.914
DDX1	F6UIF8_MONDO	ENSMODP00000012882	ENSMODP00000026373	DEAD-box helicase 1.	Archease domain-containing protein.	0.707
DDX1	FAM98A	ENSMODP00000012882	ENSMODP00000059661	DEAD-box helicase 1.	Family with sequence similarity 98 member A.	0.983
DDX1	FAM98B	ENSMODP00000012882	ENSMODP00000001384	DEAD-box helicase 1.	Family with sequence similarity 98 member B.	0.993
DDX1	RTCB	ENSMODP00000012882	ENSMODP00000001716	DEAD-box helicase 1.	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	0.992
DDX1	RTRAF	ENSMODP00000012882	ENSMODP00000051667	DEAD-box helicase 1.	RNA transcription, translation and transport factor.	0.985
DDX1	ZBTB8OS	ENSMODP00000012882	ENSMODP00000021742	DEAD-box helicase 1.	Archease domain-containing protein.	0.707