Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CA1Carbonic anhydrase 1; Reversible hydration of carbon dioxide. (262 aa)    
Predicted Functional Partners:
SLC4A1
Anion exchange protein.
   
 
 0.739
EPB42
Erythrocyte membrane protein band 4.2.
   
  
 0.703
AHSP
Uncharacterized protein.
   
  
 0.690
LOC100025850
Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.
   
 
  0.672
LOC100618776
Hemoglobin subunit alpha; Involved in oxygen transport from the lung to the various peripheral tissues.
   
  
 0.664
STK40
Serine/threonine kinase 40.
      
 0.554
RPF2
Ribosome production factor 2 homolog.
   
 
 0.545
CA7
Carbonic anhydrase 7; Belongs to the alpha-carbonic anhydrase family.
     
  0.531
F7EM52_MONDO
Uncharacterized protein.
   
  
 0.503
SLC4A2
Anion exchange protein.
   
 
 0.493
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
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