UBA5 protein (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOLL	UBA5	ENSMODP00000045320	ENSMODP00000014606	Boule homolog, RNA binding protein.	Ubiquitin like modifier activating enzyme 5.	0.922
ENSMODP00000045724	SEC63	ENSMODP00000045724	ENSMODP00000022461	J domain-containing protein.	J domain-containing protein.	0.982
ENSMODP00000045724	UBA5	ENSMODP00000045724	ENSMODP00000014606	J domain-containing protein.	Ubiquitin like modifier activating enzyme 5.	0.872
ENSMODP00000058064	UBA3	ENSMODP00000058064	ENSMODP00000004435	Uncharacterized protein.	Ubiquitin like modifier activating enzyme 3.	0.435
ENSMODP00000058064	UBA5	ENSMODP00000058064	ENSMODP00000014606	Uncharacterized protein.	Ubiquitin like modifier activating enzyme 5.	0.893
ENSMODP00000058064	UFC1	ENSMODP00000058064	ENSMODP00000006511	Uncharacterized protein.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.911
F7D195_MONDO	UBA3	ENSMODP00000037875	ENSMODP00000004435	Uncharacterized protein.	Ubiquitin like modifier activating enzyme 3.	0.435
F7D195_MONDO	UBA5	ENSMODP00000037875	ENSMODP00000014606	Uncharacterized protein.	Ubiquitin like modifier activating enzyme 5.	0.893
F7D195_MONDO	UFC1	ENSMODP00000037875	ENSMODP00000006511	Uncharacterized protein.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.911
GABARAPL2	UBA3	ENSMODP00000054340	ENSMODP00000004435	Uncharacterized protein.	Ubiquitin like modifier activating enzyme 3.	0.557
GABARAPL2	UBA5	ENSMODP00000054340	ENSMODP00000014606	Uncharacterized protein.	Ubiquitin like modifier activating enzyme 5.	0.943
SEC63	ENSMODP00000045724	ENSMODP00000022461	ENSMODP00000045724	J domain-containing protein.	J domain-containing protein.	0.982
SEC63	UBA5	ENSMODP00000022461	ENSMODP00000014606	J domain-containing protein.	Ubiquitin like modifier activating enzyme 5.	0.872
UBA3	ENSMODP00000058064	ENSMODP00000004435	ENSMODP00000058064	Ubiquitin like modifier activating enzyme 3.	Uncharacterized protein.	0.435
UBA3	F7D195_MONDO	ENSMODP00000004435	ENSMODP00000037875	Ubiquitin like modifier activating enzyme 3.	Uncharacterized protein.	0.435
UBA3	GABARAPL2	ENSMODP00000004435	ENSMODP00000054340	Ubiquitin like modifier activating enzyme 3.	Uncharacterized protein.	0.557
UBA3	UBA5	ENSMODP00000004435	ENSMODP00000014606	Ubiquitin like modifier activating enzyme 3.	Ubiquitin like modifier activating enzyme 5.	0.841
UBA3	UBE2H	ENSMODP00000004435	ENSMODP00000018284	Ubiquitin like modifier activating enzyme 3.	Ubiquitin conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family.	0.932
UBA3	UFC1	ENSMODP00000004435	ENSMODP00000006511	Ubiquitin like modifier activating enzyme 3.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.424
UBA3	UFM1	ENSMODP00000004435	ENSMODP00000029480	Ubiquitin like modifier activating enzyme 3.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.435