COX5B protein (Monodelphis domestica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

COX5B

Cytochrome c oxidase subunit 5B. (128 aa)

Predicted Functional Partners:

CYC1

0.999

UQCRFS1

0.999

COX7C

0.999

ENSMODP00000060103

0.999

COX4I1

0.998

COX2

0.998

COX3

0.998

LOC100012494

0.998

COX6A1

0.997

UQCR11

0.997

Your Current Organism:

Monodelphis domestica

NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COX2	COX3	ENSMODP00000026934	ENSMODP00000026937	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	0.999
COX2	COX4I1	ENSMODP00000026934	ENSMODP00000005661	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 4I1.	0.997
COX2	COX5B	ENSMODP00000026934	ENSMODP00000020050	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 5B.	0.998
COX2	COX6A1	ENSMODP00000026934	ENSMODP00000003857	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.979
COX2	COX7C	ENSMODP00000026934	ENSMODP00000053501	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 7C.	0.999
COX2	CYC1	ENSMODP00000026934	ENSMODP00000013110	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c1.	0.998
COX2	ENSMODP00000060103	ENSMODP00000026934	ENSMODP00000060103	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein.	0.971
COX2	LOC100012494	ENSMODP00000026934	ENSMODP00000057597	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.983
COX2	UQCR11	ENSMODP00000026934	ENSMODP00000005085	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Uncharacterized protein.	0.913
COX2	UQCRFS1	ENSMODP00000026934	ENSMODP00000015899	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
COX3	COX2	ENSMODP00000026937	ENSMODP00000026934	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.	0.999
COX3	COX4I1	ENSMODP00000026937	ENSMODP00000005661	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 4I1.	0.987
COX3	COX5B	ENSMODP00000026937	ENSMODP00000020050	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 5B.	0.998
COX3	COX6A1	ENSMODP00000026937	ENSMODP00000003857	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.983
COX3	COX7C	ENSMODP00000026937	ENSMODP00000053501	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 7C.	0.998
COX3	CYC1	ENSMODP00000026937	ENSMODP00000013110	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c1.	0.999
COX3	ENSMODP00000060103	ENSMODP00000026937	ENSMODP00000060103	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Uncharacterized protein.	0.970
COX3	LOC100012494	ENSMODP00000026937	ENSMODP00000057597	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.983
COX3	UQCR11	ENSMODP00000026937	ENSMODP00000005085	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Uncharacterized protein.	0.916
COX3	UQCRFS1	ENSMODP00000026937	ENSMODP00000015899	Cytochrome c oxidase subunit 3; Subunits I, II and III form the functional core of the enzyme complex.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999