STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ITGB4Integrin beta. (1864 aa)    
Predicted Functional Partners:
ITGA6
Integrin subunit alpha 6; Belongs to the integrin alpha chain family.
   
 0.989
LAMB3
Laminin subunit beta 3.
   
 0.969
LAMC2
Laminin subunit gamma 2.
   
 0.965
LAMA4
Laminin subunit alpha 4.
   
 0.954
LAMA3
Laminin subunit alpha 3.
   
 0.945
PTK2
Uncharacterized protein.
   
 0.941
LAMA2
Laminin subunit alpha 2.
    
 0.940
LAMC1
Laminin subunit gamma 1.
   
 0.938
SRC
Tyrosine-protein kinase.
   
 0.933
LAMB1
Laminin subunit beta 1.
    
 0.933
Your Current Organism:
Monodelphis domestica
NCBI taxonomy Id: 13616
Other names: gray short-tailed opossum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.