Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arcATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)    
Predicted Functional Partners:
GY22_02055
Ubiquitin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.991
GY22_02060
Pup deamidase/depupylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.974
pafA
Pup--protein ligase; Catalyzes the covalent attachment of the prokaryotic ubiquitin-like protein modifier Pup to the proteasomal substrate proteins, thereby targeting them for proteasomal degradation. This tagging system is termed pupylation. The ligation reaction involves the side-chain carboxylate of the C-terminal glutamate of Pup and the side- chain amino group of a substrate lysine.
 
   
 0.965
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.913
GY22_02070
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.899
GY22_06585
Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.822
GY22_10985
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.822
GY22_02195
Serine/arginine repetitive matrix protein 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.741
GY22_15095
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.741
GY22_15230
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.697
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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