Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GY22_02810AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
GY22_02815
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.916
GY22_02820
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.779
GY22_09770
PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.766
GY22_06640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.751
GY22_02825
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.612
GY22_02845
ROK family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.556
GY22_10020
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.527
GY22_02805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
GY22_02830
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.461
GY22_02835
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.461
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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