Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
GY22_03280dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)    
Predicted Functional Partners:
rbpA
Membrane protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.772
GY22_03620
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
GY22_06355
Fructose-2,6-bisphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
whiA
Sporulation protein; Involved in cell division and chromosome segregation.
  
     0.753
GY22_04745
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
GY22_15620
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
GY22_15655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
GY22_03460
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.718
GY22_03390
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.717
GY22_12965
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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