Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GY22_03345MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)    
Predicted Functional Partners:
GY22_07890
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.719
GY22_12470
Benzene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.686
narY
Nitrate reductase; With NarZV catalyzes the reduction of nitrate; the beta subunit is an iron sulfur cluster containing electron transfer subunit; one of 3 nitrate reductases in E. coli; expression of nitrate reductase Z is not dependent on nitrate levels; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.639
GY22_07905
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.609
GY22_03350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
GY22_07900
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.544
GY22_00120
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.512
GY22_12150
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.512
GY22_03340
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
GY22_09225
Uroporphyrinogen III synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.464
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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