STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GY22_03375Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)    
Predicted Functional Partners:
GY22_17300
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.835
lipB
Octanoyltransferase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
       0.626
GY22_16300
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.568
GY22_16295
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.561
GY22_09345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.550
lipA
Hypothetical protein; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
       0.514
GY22_03635
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.501
GY22_03390
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.404
GY22_09525
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.403
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.