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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GY22_04070Acetamidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)    
Predicted Functional Partners:
GY22_06705
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.890
GY22_08220
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.
  
 
  0.809
GY22_01720
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.772
GY22_00650
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.760
GY22_04215
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.
  
 
  0.724
GY22_04925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.718
GY22_03030
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.690
GY22_04065
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.678
GY22_07435
Sulfite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.541
GY22_09850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.426
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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