Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GY22_04070Acetamidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)    
Predicted Functional Partners:
GY22_06705
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.871
GY22_00315
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
     
  0.764
GY22_12120
phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
     
  0.764
GY22_12125
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.760
GY22_08220
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family.
  
 
  0.753
GY22_12295
Acylphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.733
GY22_00650
Formamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.718
GY22_01720
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.718
GY22_01145
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.713
GY22_03400
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.713
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.