GY22_04460 protein (Kocuria polaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Kocuria polaris

NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GY22_04455	GY22_04460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
GY22_04455	GY22_04465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
GY22_04455	GY22_04470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
GY22_04460	GY22_04455	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
GY22_04460	GY22_04465	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
GY22_04460	GY22_04470	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
GY22_04465	GY22_04455	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
GY22_04465	GY22_04460	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.641
GY22_04465	GY22_04470	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
GY22_04470	GY22_04455	Amylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
GY22_04470	GY22_04460	Amylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
GY22_04470	GY22_04465	Amylosucrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-binding protein SH3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773