STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GY22_05885Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)    
Predicted Functional Partners:
GY22_03030
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.849
GY22_04855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
GY22_07790
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.674
gcvP-2
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.652
GY22_04165
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
GY22_04170
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
GY22_05945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
GY22_09680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
       0.493
GY22_10815
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.