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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GY22_08050Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)    
Predicted Functional Partners:
GY22_01030
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.896
GY22_08040
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.878
GY22_01430
Glycosyl hydrolase family 32; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.867
GY22_07320
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
  
 0.858
GY22_08045
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.822
GY22_02650
Glucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family.
     
 0.818
GY22_09765
1-phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.806
xylA
Xylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family.
    
 0.797
GY22_08035
Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.794
GY22_14875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.791
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.