Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GY22_09500DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)    
Predicted Functional Partners:
GY22_03280
dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
GY22_09495
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.486
GY22_07535
dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
GY22_09490
Glyoxalase/bleomycin resistance protein/dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
GY22_14835
dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
GY22_14145
dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
GY22_03620
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.445
nucS
Hypothetical protein; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.434
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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