Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
GY22_10700Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
GY22_16490
PTS sugar transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.863
GY22_10695
Diadenosine tetraphosphate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.637
GY22_10710
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
GY22_16485
PTS ascorbate transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.592
GY22_10705
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
       0.569
GY22_10960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.535
GY22_10520
Hemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.480
GY22_06240
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.419
GY22_06085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.418
GY22_16920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.402
Your Current Organism:
Kocuria polaris
NCBI taxonomy Id: 136273
Other names: DSM 14382, JCM 12076, K. polaris, Kocuria polaris Reddy et al. 2003, MTCC 3702, NBRC 103063, strain CMS 76or
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