STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP2241_10119Function of strongly homologous gene; enzyme;Prophage ps2 putative integrase (fragment). (149 aa)    
Predicted Functional Partners:
SCA91470.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.741
SCA92472.1
Conserved hypothetical protein (putative cell wall protein); Homologs of previously reported genes of unknown function; Belongs to the peptidase S1B family.
 
   
 0.736
SCA91068.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
   
 0.665
SCA93015.1
Putative ABC transporter, ATP-binding transport protein NatA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
    0.658
SCA91004.1
Conserved exported hypothetical protein containing Sigma factor regulator C-terminal domain; Homologs of previously reported genes of unknown function.
  
     0.616
SCA91754.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.609
SCA91237.1
Protein of unknown function; No homology to any previously reported sequences.
  
     0.586
SCA92939.1
Conserved hypothetical protein containing Lipopolysaccharide biosynthesis domain; Homologs of previously reported genes of unknown function.
 
     0.566
SCA92937.1
Putative Glycosyl transferase / GT2, similar to LACPI-2187 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.556
gadR
Transcriptional regulator, Rgg/GadR/MutR family; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
    0.555
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.