STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araDL-ribulose-5-phosphate 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (243 aa)    
Predicted Functional Partners:
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.989
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.969
xylB-2
Xylulose kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.942
rpe
Ribulose-phosphate 3-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.915
araD-2
L-ribulose-5-phosphate 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.903
ulaD
3-keto-L-gulonate 6-phosphate decarboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.848
ulaB1
Putative ascorbate-specific phosphotransferase enzyme IIB component of PTS, UlaB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.838
uxaC
Uronate isomerase; Function of strongly homologous gene; enzyme.
    
 0.820
ulaA1
Putative Ascorbate-specific permease IIC component of PTS UlaA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.677
citE
Citrate lyase beta subunit CitE; Function of homologous gene experimentally demonstrated in an other organism; transporter;Citrate/malate transporter (fragment); Belongs to the HpcH/HpaI aldolase family.
   
    0.644
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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