STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacRPutative Msm operon regulatory protein (MsmR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (304 aa)    
Predicted Functional Partners:
SCA92177.1
Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.796
SCA91546.1
Conserved hypothetical protein containing AraC-type DNA-binding domain; Homologs of previously reported genes of unknown function.
 
   0.767
SCA92373.1
Conserved hypothetical protein (containing a DNA binding HTH domain, AraC-type domain); Homologs of previously reported genes of unknown function.
 
     0.752
SCA92479.1
Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.752
galT
Galactose-1-phosphate uridylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.552
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.511
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.504
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
       0.496
SCA92820.1
Putative transcriptional regulator, AraC type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
0.432
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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