STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadRTranscriptional regulator, Rgg/GadR/MutR family; Function of homologous gene experimentally demonstrated in an other organism; regulator. (272 aa)    
Predicted Functional Partners:
SCA91689.1
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.756
xerD
Tyrosine recombinase XerD-like; Function of strongly homologous gene; enzyme; Belongs to the 'phage' integrase family.
 
    0.706
SCA92939.1
Conserved hypothetical protein containing Lipopolysaccharide biosynthesis domain; Homologs of previously reported genes of unknown function.
  
     0.706
LP2241_50366
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin;putative transposase fragment.
  
     0.701
SCA91470.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.687
yacG
Conserved hypothetical protein containing Beta-lactamase A domain; Homologs of previously reported genes of unknown function.
  
     0.648
SCA91793.1
Putative glycosyltransferase / GT2,GT2, similar to LACPI-0998 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.644
yvdC
Conserved membrane hypothetical protein, metal-dependent membrane protease domain; Homologs of previously reported genes of unknown function.
  
    0.640
SCA91754.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.621
ybhC1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.606
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.