Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCA91163.1 | SCA91864.1 | LP2241_10301 | LP2241_30053 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Conserved hypothetical protein, (KH domain RNA binding protein YlqC containing); Homologs of previously reported genes of unknown function; Belongs to the UPF0109 family. | 0.919 |
| SCA91163.1 | SCA92272.1 | LP2241_10301 | LP2241_30468 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.573 |
| SCA91163.1 | lgt | LP2241_10301 | LP2241_50154 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | 0.544 |
| SCA91163.1 | rnpA | LP2241_10301 | LP2241_10299 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Ribonuclease P protein component (protein C5 component of RNase P); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.794 |
| SCA91163.1 | rplB | LP2241_10301 | LP2241_10229 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 50S ribosomal subunit protein L2 (BL2); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.516 |
| SCA91163.1 | rpmH | LP2241_10301 | LP2241_10302 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 50S ribosomal subunit protein L34 (modular protein); Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bL34 family. | 0.636 |
| SCA91163.1 | rsmG | LP2241_10301 | LP2241_30275 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 7-methylguanosine methyltransferase (16S rRNA, nucleotide G527); Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.635 |
| SCA91163.1 | yidC1 | LP2241_10301 | LP2241_10300 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.820 |
| SCA91163.1 | yidC2 | LP2241_10301 | LP2241_20214 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.592 |
| SCA91163.1 | yrrL | LP2241_10301 | LP2241_50141 | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | Conserved hypothetical protein YceG like; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family. | 0.622 |
| SCA91864.1 | SCA91163.1 | LP2241_30053 | LP2241_10301 | Conserved hypothetical protein, (KH domain RNA binding protein YlqC containing); Homologs of previously reported genes of unknown function; Belongs to the UPF0109 family. | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 0.919 |
| SCA92272.1 | SCA91163.1 | LP2241_30468 | LP2241_10301 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 0.573 |
| SCA92272.1 | rnpA | LP2241_30468 | LP2241_10299 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component (protein C5 component of RNase P); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.916 |
| SCA92272.1 | rplB | LP2241_30468 | LP2241_10229 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 50S ribosomal subunit protein L2 (BL2); One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.516 |
| SCA92272.1 | yidC1 | LP2241_30468 | LP2241_10300 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.636 |
| SCA92272.1 | yidC2 | LP2241_30468 | LP2241_20214 | Putative membrane protein insertion efficiency factor; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.640 |
| lgt | SCA91163.1 | LP2241_50154 | LP2241_10301 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 0.544 |
| lgt | yidC1 | LP2241_50154 | LP2241_10300 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.598 |
| lgt | yidC2 | LP2241_50154 | LP2241_20214 | Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. | Membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.596 |
| rnpA | SCA91163.1 | LP2241_10299 | LP2241_10301 | Ribonuclease P protein component (protein C5 component of RNase P); RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Conserved hypothetical protein (Jag protein domain); Homologs of previously reported genes of unknown function. | 0.794 |
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