STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA91317.1Peptidoglycan binding protein (Putative aggregation promoting factor); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (209 aa)    
Predicted Functional Partners:
SCA92472.1
Conserved hypothetical protein (putative cell wall protein); Homologs of previously reported genes of unknown function; Belongs to the peptidase S1B family.
 
 
 0.597
SCA91065.1
Putative type II secretion system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
    
 
 0.559
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.505
dps
DNA protection during starvation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Dps family.
   
  
 0.503
SCA92927.1
Putative cysteine, histidine-dependent amidohydrolase/peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.492
SCA92214.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.466
SCA90959.1
Putative Muramidase-2 / CBM50, CBM50, CBM50, similar to LACPI-0102 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
0.450
SCA92517.1
Putative omega 1 subunit of RNA polymerase (rnpZA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
     0.445
SecG
Preprotein translocase subunit SecG (TC 3.A.5.1.1); Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
     0.412
SCA91319.1
Conserved hypothetical protein (containing a LytTR DNA-binding domain); Homologs of previously reported genes of unknown function.
  
  
 0.406
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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