STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recUHolliday junction resolvase RecU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. (204 aa)    
Predicted Functional Partners:
ponA
Penicillin-binding protein 1A; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.852
ynbE
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.752
recJ
Single-stranded-DNA-specific exonuclease RecJ; Function of strongly homologous gene; enzyme.
   
  
 0.650
SCA92768.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.620
rnhC
Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
  
   
 0.598
SCA91421.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0398 family.
 
  
 0.579
SCA91366.1
Putative RNA/thiamine triphosphatase(yjbK); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.568
dnaI
Helicase loader DnaI; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
   
 0.548
mecA
Putative adapter protein(MecA); Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis; Belongs to the MecA family.
  
     0.501
nrnA
Bifunctional oligoribonuclease and PAP phosphatase NrnA; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.488
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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