STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA91455.1Regulatory protein, TetR; Function of strongly homologous gene; regulator. (187 aa)    
Predicted Functional Partners:
SCA92558.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.683
SCA91456.1
Putative LacX protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.564
SCA91232.1
Amino acid ABC transporter, glutamine-binding protein/permease protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 
 0.540
SCA92078.1
Putative 5-bromo-4-chloroindolyl phosphate hydrolysis protein; Homologs of previously reported genes of unknown function.
  
     0.523
SCA91426.1
Putative hydrolase or acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.503
yvlB
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.454
SCA91366.1
Putative RNA/thiamine triphosphatase(yjbK); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.451
SCA91969.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
   0.442
yjbB
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.435
yjbF
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.423
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.