STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yesOPutative Sugar transport system sugar-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (441 aa)    
Predicted Functional Partners:
yesQ
Probable ABC transporter permease protein YesQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter;putative ABC transporter permease protein YesP (fragment 2).
 
 0.971
SCA92057.1
Conserved membrane hypothetical protein (containing PDZ domains); Homologs of previously reported genes of unknown function.
 
    0.753
msmK
Multiple sugar-binding transport ATP-binding protein MsmK; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
  
 
 0.717
lplC1
Putative protein LplC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.679
lplC2
Putative ABC transporter permease protein (LplC); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.652
mdxF
Maltodextrin transport system permease protein MdxF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.638
SCA92264.1
Putative fructose-amino acid permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.621
lacF
Lactose transport system permease protein LacF; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.616
SCA92013.1
Putative D-ribose-binding periplasmic protein RbsB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.613
xylA
D-xylose isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the xylose isomerase family.
     
 0.589
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.