STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yesQProbable ABC transporter permease protein YesQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter;putative ABC transporter permease protein YesP (fragment 2). (291 aa)    
Predicted Functional Partners:
yesO
Putative Sugar transport system sugar-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.971
msmK
Multiple sugar-binding transport ATP-binding protein MsmK; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
 
 0.917
SCA92264.1
Putative fructose-amino acid permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.903
SCA90987.1
Putative rhamnogalacturonan permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.898
MsmF
Transmembrane permease MsmF; Function of strongly homologous gene; transporter.
 
 
 0.897
msmF
Multiple sugar-binding transport system permease protein MsmF; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
 0.895
lacF
Lactose transport system permease protein LacF; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.889
amyD
Putative starch degradation products transport system permease protein AmyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.874
lplB1
Putative multiple-sugar transport system permease YteP (lplB); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.816
lplB2
Putative ABC superfamily ATP binding cassette transporter, membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.784
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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