STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA91546.1Conserved hypothetical protein containing AraC-type DNA-binding domain; Homologs of previously reported genes of unknown function. (291 aa)    
Predicted Functional Partners:
SCA91547.1
Putative esterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.800
SCA91548.1
Putative xylanase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.788
SCA92373.1
Conserved hypothetical protein (containing a DNA binding HTH domain, AraC-type domain); Homologs of previously reported genes of unknown function.
 
   0.785
xylR2
Putative Msm operon regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.782
lacR
Putative Msm operon regulatory protein (MsmR); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.767
msmR1
Putative Msm operon regulatory protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   0.759
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.646
xynC
Acetyl esterase / CE1, similar to LACPI-0697 from L. piscium MKFS47; Function of strongly homologous gene; enzyme.
 
     0.623
SCA92177.1
Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.553
SCA92820.1
Putative transcriptional regulator, AraC type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.541
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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