STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ysdAPutative ABC permease type Na+ efflux pump, yhaP; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (406 aa)    
Predicted Functional Partners:
ysdB
ABC transporter ATP-binding protein; Function of strongly homologous gene; transporter.
 
  
 0.973
SCA91654.1
Putative Late competence protein ComEC/Rec2, DNA transport (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.628
comEA
Competence ComEA operon protein 1; Function of homologous gene experimentally demonstrated in an other organism; receptor.
       0.603
SCA91649.1
Conserved hypothetical protein, (Lambda repressor-like, DNA-binding domain-containing protein); Homologs of previously reported genes of unknown function.
       0.560
SCA91650.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.545
SCA91655.1
Putative carbohydrate esterase / CE1, similar to LACPI-0857 from L. piscium MKFS47; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.457
yjjG
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0374 family.
 
     0.447
nadR
Bifunctional DNA-binding transcriptional repressor and NMN adenylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
     0.409
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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