Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SCA90945.1 | tagH | LP2241_10079 | LP2241_20555 | ABC-2 family transporter protein; Function of strongly homologous gene; transporter. | Teichoic acids export ATP-binding protein TagH with CBM50 domain; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system. | 0.657 |
| SCA92530.1 | tagH | LP2241_50104 | LP2241_20555 | Conserved membrane hypothetical protein containing permease component domain; Homologs of previously reported genes of unknown function. | Teichoic acids export ATP-binding protein TagH with CBM50 domain; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system. | 0.575 |
| SCA92942.1 | tagF-2 | LP2241_50521 | LP2241_20561 | Putative O-antigen export system permease protein RfbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Putative CDP-Glycerol:Poly(Glycerophosphate) glycerophosphotransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme;CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase involved in teichoic acid biosynthesis TagF(fragment2). | 0.400 |
| SCA92942.1 | tagH | LP2241_50521 | LP2241_20555 | Putative O-antigen export system permease protein RfbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | Teichoic acids export ATP-binding protein TagH with CBM50 domain; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system. | 0.784 |
| atpA | atpC | LP2241_20431 | LP2241_20434 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
| atpA | atpD | LP2241_20431 | LP2241_20433 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.999 |
| atpA | atpG | LP2241_20431 | LP2241_20432 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpA | atpH | LP2241_20431 | LP2241_20430 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
| atpA | tagH | LP2241_20431 | LP2241_20555 | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | Teichoic acids export ATP-binding protein TagH with CBM50 domain; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system. | 0.453 |
| atpC | atpA | LP2241_20434 | LP2241_20431 | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.999 |
| atpC | atpD | LP2241_20434 | LP2241_20433 | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.999 |
| atpC | atpG | LP2241_20434 | LP2241_20432 | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpC | atpH | LP2241_20434 | LP2241_20430 | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
| atpC | tagH | LP2241_20434 | LP2241_20555 | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | Teichoic acids export ATP-binding protein TagH with CBM50 domain; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system. | 0.452 |
| atpD | atpA | LP2241_20433 | LP2241_20431 | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.999 |
| atpD | atpC | LP2241_20433 | LP2241_20434 | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase epsilon chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.999 |
| atpD | atpG | LP2241_20433 | LP2241_20432 | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.999 |
| atpD | atpH | LP2241_20433 | LP2241_20430 | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
| atpD | tagH | LP2241_20433 | LP2241_20555 | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Teichoic acids export ATP-binding protein TagH with CBM50 domain; Part of the ABC transporter complex TagGH involved in teichoic acids export. Responsible for energy coupling to the transport system. | 0.470 |
| atpG | atpA | LP2241_20432 | LP2241_20431 | ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.999 |
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