STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCA91945.1Putative transcriptional regulator, gntR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (233 aa)    
Predicted Functional Partners:
SCA91946.1
Conserved hypothetical protein, (TPR-repeat-containing protein); Homologs of previously reported genes of unknown function.
 
     0.828
SCA91944.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.779
SCA91943.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
nadR
Bifunctional DNA-binding transcriptional repressor and NMN adenylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
    0.638
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
    0.601
alsS
Acetolactate synthase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the TPP enzyme family.
  
    0.580
SCA91546.1
Conserved hypothetical protein containing AraC-type DNA-binding domain; Homologs of previously reported genes of unknown function.
  
  
 0.527
SCA92177.1
Putative Transcriptional regulator, AraC family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.527
SCA92820.1
Putative transcriptional regulator, AraC type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.527
SCA92658.1
Putative transcriptional regulator, Helix-turn-helix domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
  
 0.491
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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