STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LP2241_30154Glycine betaine/carnitine/choline transport system permease protein opuCB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter;putative fragment of glycine betaine/L-proline ABC transporter. (507 aa)    
Predicted Functional Partners:
opuAB
Glycine betaine ABC transporter (permease, modular protein); Function of strongly homologous gene; transporter.
 
 
0.885
nifJ
Pyruvate-flavodoxin oxidoreductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.714
adh2
Aldehyde-alcohol dehydrogenase 2 (Includes: Alcohol dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.702
opuAA
Glycine betaine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 0.627
SCA92252.1
Putative Transcription regulator HTH, MarR-type; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.600
adcR
Transcriptional repressor AdcR; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
  
 0.578
SCA91232.1
Amino acid ABC transporter, glutamine-binding protein/permease protein; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.560
SCA91263.1
Transcription regulator HTH, MarR-type; Function of strongly homologous gene; regulator.
 
  
 0.549
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.518
SCA91080.1
Putative NAD(P)H nitroreductase YdgI; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.482
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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