STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lemAConserved hypothetical protein, LemA family; Homologs of previously reported genes of unknown function. (194 aa)    
Predicted Functional Partners:
SCA92062.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.923
potD
ABC transporter, spermidine putrescine-binding protein PotD; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.781
potC
Spermidine/putrescine transport system permease protein PotC; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.594
potB
Spermidine/putrescine transport system permease protein PotB; Function of homologous gene experimentally demonstrated in an other organism; transporter.
       0.592
potA
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
    0.577
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.553
rlmCD
Methyltransferase of m5U747 and m5U1939 in 23S RNA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.516
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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