STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agaRAlpha-galactosidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (733 aa)    
Predicted Functional Partners:
cbgA
Beta-galactosidase / GH2, similar to LACPI-0215 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.971
ganA
Beta-galactosidase GanA / GH42, similar to LACPI-0219 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.947
cscA
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.923
scrB
Sucrose-6-phosphate hydrolase / GH32, similar to LACPI-1482 from L. piscium MKFS47; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.918
malL
Oligo-1,6-glucosidase / GH13, similar to LACPI-1484 from L. piscium MKFS47; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.917
apu
Putative Amylopullulanase (Includes: Alpha-amylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.915
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
  0.906
xylM
Putative Aldose 1-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
  0.906
gtfA
Sucrose phosphorylase / GH13, similar to LACPI-1289 from L. piscium MKFS47; Function of strongly homologous gene; enzyme.
 
  
 0.791
galT
Galactose-1-phosphate uridylyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.608
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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