STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvaAConserved hypothetical protein (YqgQ-like domain); Homologs of previously reported genes of unknown function. (76 aa)    
Predicted Functional Partners:
SCA92235.1
Putative sulfur transferase with Rhodanese-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.827
glcK
Glucokinase (glucose kinase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.816
lytR
Putative Transcription regulator lytR; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.773
dps
DNA protection during starvation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the Dps family.
 
    0.654
SCA92517.1
Putative omega 1 subunit of RNA polymerase (rnpZA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
  
 0.442
rpsK
30S ribosomal subunit protein S11 (BS12); Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
    0.420
pepX
Xaa-Pro dipeptidyl-peptidase; Removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline; Belongs to the peptidase S15 family.
  
     0.413
SCA92239.1
Putative peptidase; Homologs of previously reported genes of unknown function.
       0.406
Your Current Organism:
Lactococcus piscium
NCBI taxonomy Id: 1364
Other names: ATCC 700018, CCUG 32207, CCUG 32732, CIP 104371, DSM 6634, JCM 11055, L. piscium, NCFB 2778, NCIMB 13196, strain HRIA 68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.